index.php from eXtensible Genome Data Broker at Krugle

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<?php
if(empty($SITEDEF_H)){require('SITEDEF.php');}
if(empty($PARAM_H)){require('getPARAM.php');}
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/TWO_COLUMN_HEADER/" . $SSI_QUERYSTRING);
?>

<div id='mainWLS' align="center">
<h2 align="center"><font color="#000000"><big>UCA Example: Gene Model Merge</big></font></h1>

<table width="95%" align="center" style="border-color:#999966;border-style:solid;border-width:thin;" >
<tr>
 <td COLSPAN=2 style="background-color:#999966;padding-left:25;"><FONT COLOR='lightgrey'>UCA SHOWCASE</FONT></td>
</tr>
<tr>
 <td> 
   <table style="border-color:#000000;border-style:solid;border-width:thin;" >
     <tr><td><IMG SRC='./ruler.png'></td></tr>
     <tr><td><IMG SRC='./UCA.png'></td></tr>
     <tr><td><IMG SRC='./GBK.png'></td></tr>
     <tr><td><IMG SRC='./CDNA.png'></td></tr>
     <tr><td><IMG SRC='./EST.png'></td></tr>
   </table>
 </td>
 <td valign='TOP'>
<P><B>UCA-At1g01770-2:</B><BR>
The User Contributed Annotation (green gene structure) to the left shows how a user of AtGDB 
has provided an updated annotation. This annotation explains the inconsistancy of the current
gene model (At1g01780) with the spliced alignment of ESTs and cDNAs in this region. In 
addition to the support gained by the alignment of a full-length cDNA (gi 16604690), this UCA
is supported and consistent with the presence of an EST <I>clone pair</I> (represented by the
green box around ESTs 19868299 and 19828112). Via the use of GeneSeqer@AtGDB, spliced 
alignments of the sequences in this region were threaded into a reasonable gene structure 
which suggests that Gene Model At1g01780 should actually be considered an extended isoform of
Gene Model At1g01770.
</P>   
 </td>
</tr>
</table>

</div>

<?php
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/STANDARD_FOOTER/" . $SSI_QUERYSTRING);
?>

See more files for this project here

eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

  CDNA.png
  EST.png
  GBK.png
  UCA.png
  index.php
  ruler.png