researcher.properties from Re-searcher at Krugle

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#pages that can be accessed by a simple user
user-pages=SequenceList NewSequence HitList QueryDetails Subhits ViewSequence FastaList

#pages that can be accessed by admin
admin-pages=UserList NewUser Configuration

#ncbi psiblast (web) supported databases
ncbi-databases=nr refseq swissprot pat pdb env_nr month

See more files for this project here

Re-searcher

Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.

Project homepage: http://sourceforge.net/projects/researcher
Programming language(s): Java,XML
License: other

  META-INF/
    hivemodule.xml
    honeymodule.xml
  researcher/
    beans/
      BlastDatabase.java
      BlastQuery.java
      Configuration.java
      FastaSequence.java
      Hit.java
      SecondaryBlastQuery.java
      Subhit.java
      User.java
    blast/
      cmd/
        BlastOutputStyle.java
        PsiBlastCommand.java
        PsiBlastCommandFactory.java
        PsiBlastResult.java
        PsiBlastResultHandler.java
        PsiBlastXmlParseException.java
        PsiBlastXmlParser.java
        PsiblastExecutionException.java
        Tools.java
      exec/
        PsiBlastExecutor.java
        PsiBlastExecutorResult.java
        QBlastExecutor.java
        SshPsiBlastExecutor.java
      periodical/
        HitsCollection.java
        JobsManager.java
        LocalSearchJob.java
        NCBISearchJob.java
      qblast/
        FormParser.java
        Parameter.java
        PsiBlastTextParseException.java
        PsiBlastTextParser.java
        QBlast.java
        QBlastCommand.java
        QBlastCommandFactory.java
        QBlastException.java
        QBlastParser.java
        QBlastPutResult.java
        QBlastSearchException.java
        Tests.java
      BlastTypes.java
      CompositionalAdjustments.java
      SearchLocation.java
    cache/
      Cache.java
    db/
      service/
        ResearcherPersistenceService.java
        ResearcherPersistenceServiceImpl.java
        TransactionalDirectService.java
      GlobalDAO.java
      HibernateUtil.java
    exceptions/
      AuthenticationException.java
      SshAuthenticationException.java
      SystemUnavailableException.java
    periodical/
    qblast/
      parameters/
        Params.java
        QBlastFilter.java
        QBlastFormatObject.java
        QBlastFormatType.java
    ssh/
      SshClient.java
    utils/
      AlignmentsRenderer.java
      Formatter.java
      MailSender.java
      Passwords.java
      Registry.java
      SeqUtil.java
      Utils.java
    web/
      components/
      Configuration.java
      FastaList.java
      HitList.java
      Home.java
      Login.java
      NewSequence.java
      NewUser.java
      PersistenceProviderPage.java
      QueryDetails.java
      ResearcherPage.java
      ResearcherServlet.java
      Rights.java
      SelectionModels.java
      SequenceList.java
      Subhits.java
      UserList.java
      ViewSequence.java
  hibernate.cfg.xml
  log4j.properties
  researcher.properties