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index.php from eXtensible Genome Data Broker at Krugle


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<?php
if(empty($SITEDEF_H)){require('SITEDEF.php');}
if(empty($PARAM_H)){require('getPARAM.php');}
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/TWO_COLUMN_HEADER/" . $SSI_QUERYSTRING);
?>

<div ID="mainWLS" align="center">
<h1 align="center"><font color="#000000"><big>Projects</big></font></h1>
<P align="left"><?php echo $SITENAMEshort; ?> is being developed with genome-wide research applications in mind.  There are many interesting questions that can now be approached from such genome-wide perspective.  The spliced alignment data at the core of this database and the query capabilities inherent in the database design should facilitate such approaches.  The links below refer to individual project pages.  If you would like to contribute a project of your own, please contact us.</P>
<ul>
  <li> <h4 align="left"><a href="BXZ03B/"><font color="#0000FF">BXZ03B</font></a> - Supplementary data: a paper describing the GeneSeqer spliced alignment tool</h4>

  <li> <h4 align="left"><a href="TBWB04/"><font color="#0000FF">TBWB04</font></a> - Characterization of the phosphoinositide-specific phospholipase C gene family in <I>Arabidopsis thaliana</I></h4>

  <li> <h4 align="left"><a href="RHMB05PP/"><font color="#0000FF">RHMB05PP</font></a> - Assessment of the number and roles of microRNA genes in <I>Arabidopsis thaliana</I></h4>

  <li> <h4 align="left"><a href="ZB03NAR/"><font color="#0000FF">ZB03NAR</font></a> - Identification and analysis of U12-type introns in <I>Arabidopsis</I></h4>

  <li> <h4 align="left"><a href="ZSB03PP/"><font color="#0000FF">ZSB03PP</font></a> - Complete <I>Arabidopsis</I> EST mapping by spliced alignment of the ESTs onto the <I>Arabidopsis</I> genome (including description and discussion of the methods and results underlying AtGDB)</h4>
</ul>
</div>

<?php
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/STANDARD_FOOTER/" . $SSI_QUERYSTRING);
?>




See more files for this project here

eXtensible Genome Data Broker

The xGDB project provides scientists with an online portal for the integration of diverse sources of genomic data. Portals allow researchers to effectively target a specific scientific question by customizing their interactions with available data.

Project homepage: http://sourceforge.net/projects/xgdb
Programming language(s): JavaScript,Perl,PHP
License: other

  BMBR03/
    IMM/
      FOO/
        ATchr4-cs3639-10734472-10737855.html
        ATchr4-cs3639-10734472-10737855.png
        gsq.imm-cs3639.html
        gsq.imm-cs3639.html_img
        gsq.imm-cs3639_top.html
      _WT/
        TEST/
          ATchr4-V189
          ATchr4-cs3627
          gsviewL.pl
          imm-V189-cdna
          imm-cs3627-cdna
          parseGBKannotation.pl
          xGeneSeqerWS
        ATchr4-cs3627-10734472-10737855.html
        ATchr4-cs3627-10734472-10737855.png
        gsq.imm-V189
        gsq.imm-cs3157
        gsq.imm-cs3627.html
        gsq.imm-cs3627.html_img
        gsq.imm-cs3627.thml
        gsq.imm-cs3627A
        gsq.imm-cs3627B
        gsq.imm-cs3627_top.html
        gsq.imm-cs3630
        gsq.imm-cs3639
        gsq.imm-wt
        parseGBKannotation.pl
        sdsPlantGDBgsview.pl
        std_img
      ATchr4-V189
      ATchr4-V189-10734472-10737855.html
      ATchr4-V189-10734472-10737855.png
      ATchr4-cs3157
      ATchr4-cs3157-10734472-10737855.html
      ATchr4-cs3157-10734472-10737855.png
      ATchr4-cs3627
      ATchr4-cs3627-10734472-10737855.html
      ATchr4-cs3627-10734472-10737855.png
      ATchr4-cs3630
      ATchr4-cs3630-10734472-10737855.html
      ATchr4-cs3630-10734472-10737855.png
      ATchr4-cs3639
      ATchr4-cs3639-10734472-10737855.html
      ATchr4-cs3639-10734472-10737855.png
      ATchr4-wt
      ATchr4-wt-10734472-10737855.html
      ATchr4-wt-10734472-10737855.png
      REDOsp.out
      edf
      gsq.imm-V189.html
      gsq.imm-V189.html_img
      gsq.imm-V189_top.html
      gsq.imm-cs3157.html
      gsq.imm-cs3157.html_img
      gsq.imm-cs3157_top.html
      gsq.imm-cs3627.html
      gsq.imm-cs3627.html_img
      gsq.imm-cs3627_top.html
      gsq.imm-cs3630.html
      gsq.imm-cs3630.html_img
      gsq.imm-cs3630_top.html
      gsq.imm-cs3639.html
      gsq.imm-cs3639.html_img
      gsq.imm-cs3639_top.html
      gsq.imm-wt.html
      gsq.imm-wt.html_img
      gsq.imm-wt_top.html
      gsq.immPRT
      gsq2AT.immPRT
      imm-V189-cdna
      imm-cs3157-cdna
      imm-cs3627-cdna
      imm-cs3627A-cdna
      imm-cs3627B-cdna
      imm-cs3630-cdna
      imm-cs3639-cdna
      imm-wt-cdna
      immPRT
      index.html
      nav.imm.html
      xgsq
    VAR2/
      FOO/
      _WT/
      ATchr2-var2-10
      ATchr2-var2-10-13122655-13126027.html
      ATchr2-var2-10-13122655-13126027.png
      ATchr2-var2-4
      ATchr2-var2-4-13122655-13126027.html
      ATchr2-var2-4-13122655-13126027.png
      ATchr2-var2-9
      ATchr2-var2-9-13122655-13126027.html
      ATchr2-var2-9-13122655-13126027.png
      ATchr2-wt
      ATchr2-wt-13122655-13126027.html
      ATchr2-wt-13122655-13126027.png
      edf
      gsq.var2-10.html
      gsq.var2-10.html_img
      gsq.var2-10_top.html
      gsq.var2-4.html
      gsq.var2-4.html_img
      gsq.var2-4_top.html
      gsq.var2-9.html
      gsq.var2-9.html_img
      gsq.var2-9_top.html
      gsq.var2-wt.html
      gsq.var2-wt.html_img
      gsq.var2-wt_top.html
      index.html
      nav.var2.html
      var2-10-cdna
      var2-4-cdna
      var2-9-cdna
      var2-wt-cdna
      xgsq
    greenwhite_paper.gif
    help.html
    index.html
    list
    sm.png
  BXZ03B/
    AraSet/
    OsBAC/
    atac/
    img/
    index.php
    xc
  RHMB05PP/
    figure_S1.jpg
    figure_S1.php
    index.php
    method.php
    table_S1.php
    table_S2.php
    table_S3.php
    table_S4.php
  TBWB04/
    PLC/
    AtOs-Human-PLC-NJtree.pdf
    AtOs-Human-PLC-distances.txt
    AtOs-Human-PLC.aln
    AtOs-Human-PLC.fas
    Plant-Human-PLC-Matching-NJtree.pdf
    Plant-Human-PLC-Matching-distances.txt
    Plant-Human-PLC-Matching.aln
    Plant-Human-PLC-Matching.fas
    Plant-Human-PLC-NJtree.pdf
    Plant-Human-PLC-distances.txt
    Plant-Human-PLC.aln
    Plant-Human-PLC.fas
    index.php
    plc.png
  ZB03NAR/
    U12.php
    U12.png
    U12_at_ax_acc_new.gif
    U12_at_ax_branch_new.gif
    U12_at_ax_donor_new.gif
    U12_gt_ag_acc_new.gif
    U12_gt_ag_branch_new.gif
    U12_gt_ag_donor_new.gif
    U12_splice_signals.php
    index.php
    ins
    multi_align_nhx.html
  ZSB03PP/
    algnmnts/
    alternativeSplicing/
    data/
    img/
    non_canonical/
    novel/
    ESTclustering.php
    downstreamUTRintrons.php
    extendedCoverage.php
    geneAnnotationVScdna.php
    geneAnnotationVSest.php
    index.php
    miniexons.php
    ncSpliceSites.php
    novelGenes.php
    u12Introns.php
    upstreamUTRintrons.php
    virtualNorthern.php
  index.php