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Configuration.properties from Re-searcher at Krugle


Show Configuration.properties syntax highlighted

Path=Path
Name=Name
AddNewDatabase=Add new database
Add=Add
Delete=Delete
DatabaseList=Databases
save=Save
blastParameters=Parameters
blastHostname=Blast Server Hostname or IP address
blastUsername=Blast Server SSH Username
blastPassword=Blast Server SSH Password
pathToPrivateKey=Path to the Private Key File on the Web Server
passphrase=Passphrase for the Private Key
psiBlastCommand=Command Used to Invoke Psiblast
fastaCmdCommand=Command Used to Invoke Fastacmd
pathToTmp=Path for Temporary File Storage
processorsToUse=Number of Processors to Use for Blast
systemConfiguration=System Configuration
smtpHostname=SMTP Hostname
emailFrom=Email From
emailOpts=Email Notification Options
psiblastOpts=Psiblast Server Options
applicationLink=Application Link (Needed to Generate a Link to a Hit List)
otherOpts=Other Options
allowRegistration=Allow User Registration
psiblastOptsHelp=Here you can configure local psiblast server to acquire the ability to perform periodical searches on your own server. If you do not need this ability just leave all the form fields blank. <br/><span class="help_click">Click the questionmark for more help.</span>
emailOptsHelp=Email notification options must be configured in order to allow email notifications on new hits. <br/><span class="help_click">Click the questionmark for more help.</span>
otherOptsHelp=Allow User Registration: if this field is set on, 'Create new user' link appears on the login page so users can register themselves. <br/><span class="help_click">Click the questionmark to go to the full help document.</span>
AddNewDatabaseHelp=To allow searches on a local server psiblast databases have to be entered here. To add a new database enter the name of the database and a path to the fields at the bottom of the configuration page and press add. For instance name can be: 'NR', path: '/usr/local/blast/data/nr'. It is possible to see all the databases in the table on the bottom right. <br/><span class="help_click">Click the questionmark to go to the full help document.</span>




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Re-searcher

Re-searcher is the system for recurrent psiblast searches. It enables timely detection of new proteins on the protein sequence databases. Searches can be done on a local server or at NCBI. It has a user-friendly web interface.

Project homepage: http://sourceforge.net/projects/researcher
Programming language(s): Java,XML
License: other

  lib/
    activation.jar
    antlr-2.7.6rc1.jar
    asm-attrs.jar
    asm.jar
    bytecode-0.92.jar
    c3p0-0.9.1-pre6.jar
    cglib-2.1.3.jar
    commons-cli.jar
    commons-codec-1.3.jar
    commons-collections-2.1.1.jar
    commons-dbcp-1.1.jar
    commons-email-1.0.jar
    commons-fileupload-1.1.jar
    commons-httpclient-3.0.1.jar
    commons-io-1.1.jar
    commons-logging-1.0.4.jar
    commons-pool-1.1.jar
    derby.jar
    dom4j-1.6.1.jar
    ehcache-1.1.jar
    ejb3-persistence.jar
    ganymed-ssh2-build209.jar
    hibernate-annotations.jar
    hibernate3.jar
    hivemind-1.1.1.jar
    hivemind-lib-1.1.1.jar
    honeycomb.jar
    javassist-3.0.jar
    jericho-html-2.2.jar
    jta.jar
    log4j-1.2.11.jar
    mail.jar
    ognl-2.6.7.jar
    oro-2.0.8.jar
    servlet-api-2.5.jar
    tapestry-4.0.2.jar
    tapestry-annotations-4.0.2.jar
    tapestry-contrib-4.0.2.jar
    tapestry-portlet-4.0.2.jar
    xerces.jar
    xercesImpl.jar
    xml-apis.jar
  Alignments.jwc
  Alignments.properties
  Border.html
  Border.jwc
  Border.properties
  Configuration.html
  Configuration.page
  Configuration.properties
  FastaList.html
  FastaList.page
  HelpBox.html
  HelpBox.jwc
  HelpBox.script
  HitList.html
  HitList.page
  HitList.properties
  Home.html
  Home.page
  InsertNbsp.jwc
  Login.html
  Login.page
  Login.properties
  NewSequence.html
  NewSequence.page
  NewSequence.properties
  NewUser.html
  NewUser.page
  NewUser.properties
  QueryDetails.html
  QueryDetails.page
  QueryDetails.properties
  SequenceList.html
  SequenceList.page
  SequenceList.properties
  Subhits.html
  Subhits.page
  UserList.html
  UserList.page
  UserList.properties
  ViewSequence.html
  ViewSequence.page
  ViewSequence.properties
  researcher.application
  web.xml