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cvodea_impl.h from Oscill8 at Krugle


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/*
 * -----------------------------------------------------------------
 * $Revision: 1.1 $
 * $Date: 2005/05/02 03:39:30 $
 * ----------------------------------------------------------------- 
 * Programmer(s): Radu Serban @ LLNL
 * -----------------------------------------------------------------
 * Copyright (c) 2002, The Regents of the University of California.
 * Produced at the Lawrence Livermore National Laboratory.
 * All rights reserved.
 * For details, see sundials/cvodes/LICENSE.
 * -----------------------------------------------------------------
 * Implementation header file for the CVODEA adjoint integrator.
 * -----------------------------------------------------------------
 */

#ifdef __cplusplus  /* wrapper to enable C++ usage */
extern "C" {
#endif

#ifndef _CVODEA_IMPL_H
#define _CVODEA_IMPL_H

#include <stdio.h>

#include "cvodea.h"
#include "cvodes_impl.h"
#include "cvdense_impl.h"
#include "cvband_impl.h"
#include "cvspgmr_impl.h"
#include "cvbandpre_impl.h"
#include "cvbbdpre_impl.h"

#include "nvector.h"
#include "sundialstypes.h"

/*
 * -----------------------------------------------------------------
 * Types : struct CkpntMemRec, CkpntMem
 * -----------------------------------------------------------------
 * The type CkpntMem is type pointer to struct CkpntMemRec.
 * This structure contains fields to store all information at a
 * check point that is needed to 'hot' start cvodes.
 * -----------------------------------------------------------------
 */

typedef struct CkpntMemRec {

  /* Integration limits */
  realtype ck_t0;
  realtype ck_t1;

  /* Nordsieck History Array */
  N_Vector ck_zn[L_MAX];

  /* Nordsieck History Array for quadratures */
  N_Vector ck_znQ[L_MAX];

  /* Do we need to carry quadratures? */
  booleantype ck_quad;

  /* Was ck_zn[qmax] allocated?
     ck_zqm = 0    - no
     ck_zqm = qmax - yes      */
  int ck_zqm;

  /* Step data */
  long int ck_nst;
  int      ck_q;
  int      ck_qprime;
  int      ck_qwait;
  int      ck_L;
  realtype ck_gammap;
  realtype ck_h;
  realtype ck_hprime;
  realtype ck_hscale;
  realtype ck_eta;
  realtype ck_etamax;
  realtype ck_tau[L_MAX+1];
  realtype ck_tq[NUM_TESTS+1];
  realtype ck_l[L_MAX];

  /* Saved values */
  realtype ck_saved_tq5;

  /* Pointer to next structure in list */
  struct CkpntMemRec *ck_next;

} *CkpntMem;

/*
 * -----------------------------------------------------------------
 * Types : struct DtpntMemRec, DtpntMem
 * -----------------------------------------------------------------
 * The type DtpntMem is type pointer to struct DtpntMemRec.
 * This structure contains fields to store all information at a
 * data point that is needed to interpolate solution of forward
 * simulations.
 * -----------------------------------------------------------------
 */

typedef struct DtpntMemRec {

  /* time */
  realtype t;

  /* solution */
  N_Vector y;

  /* solution derivative */
  N_Vector yd;

} *DtpntMem;

/*
 * -----------------------------------------------------------------
 * Types : struct CVadjMemRec, CVadjMem
 * -----------------------------------------------------------------
 * The type CVadjMem is type pointer to struct CVadjMemRec.
 * This structure contins fields to store all information
 * necessary for adjoint sensitivity analysis.
 * -----------------------------------------------------------------
 */

typedef struct CVadjMemRec {

  /* CVODE memory for forward runs */
  struct CVodeMemRec *cv_mem;

  /* CVODE memory for backward run */
  struct CVodeMemRec *cvb_mem;

  /* Storage for check point information */
  struct CkpntMemRec *ck_mem;

  /* Storage for data from forward runs */
  struct DtpntMemRec **dt_mem;

  /* Right hand side function (fB) for backward run */
  CVRhsFnB ca_fB;

  /* Right hand side quadrature function (fQB) for backward run */
  CVQuadRhsFnB ca_fQB;

  /* Dense Jacobian function (djacB) for backward run */
  CVDenseJacFnB ca_djacB;

  /* Banded Jacobian function (bjacB) for backward run */
  CVBandJacFnB ca_bjacB;

  /* Jac times vec routine (jtimesB) for backward run */
  CVSpgmrJacTimesVecFnB ca_jtimesB;

  /* Preconditioner routines (precondB and psolveB) for backward run */
  CVSpgmrPrecSetupFnB ca_psetB;
  CVSpgmrPrecSolveFnB ca_psolveB;

  /* BBD user functions (glocB and cfnB) for backward run */
  CVLocalFnB ca_glocB;
  CVCommFnB  ca_cfnB;

  /* User f_dataB */
  void *ca_f_dataB;

  /* User fQ_dataB */
  void *ca_fQ_dataB;

  /* User jac_dataB */
  void *ca_jac_dataB;

  /* User P_dataB */
  void *ca_P_dataB;

  /* BP prec data */
  void *ca_bp_dataB;

  /* BBD prec data */
  void *ca_bbd_dataB;

  /* Unit roundoff */
  realtype ca_uround;

  /* Integration interval */
  realtype ca_tinitial, ca_tfinal;

  /* Time at which to extract quadratures */
  realtype ca_t_for_quad;

  /* Number of check points */
  int ca_nckpnts;

  /* Number of steps between 2 check points */
  long int ca_nsteps;

  /* Flag to indicate that data in dt_mem is new */
  booleantype ca_newData;

  /* address of the check point structure for which data is available */
  struct CkpntMemRec *ca_ckpntData;

  /* Actual number of data points saved in current dt_mem */
  /* Commonly, np = nsteps+1                              */
  long int ca_np;

  /* Temporary space used by the Hermite interpolation */
  realtype ca_delta;
  N_Vector ca_Y0, ca_Y1;
  N_Vector ca_ytmp;

} *CVadjMem;

/* Error Messages */

#define _CVAM_          "CVadjMalloc-- "
#define MSGAM_NO_MEM    _CVAM_ "cvode_mem = NULL illegal.\n\n"
#define MSGAM_BAD_STEPS _CVAM_ "Steps non-positive illegal.\n\n"
#define MSGAM_MEM_FAIL  _CVAM_ "A memory request failed.\n\n"

#endif

#ifdef __cplusplus
}
#endif




See more files for this project here

Oscill8

Oscill8 is a suite of tools for analyzing dynamical systems which concentrates on understanding how the dynamical behavior depends on the parameters using bifurcation theory and reaction network theory.

Project homepage: http://sourceforge.net/projects/oscill8
Programming language(s): C,C#,C++
License: other

  ReadMe.txt
  band.c
  band.h
  cvband.c
  cvband.h
  cvband_impl.h
  cvbandpre.c
  cvbandpre.h
  cvbandpre_impl.h
  cvbbdpre.c
  cvbbdpre.h
  cvbbdpre_impl.h
  cvdense.c
  cvdense.h
  cvdense_impl.h
  cvdiag.c
  cvdiag.h
  cvdiag_impl.h
  cvodea.c
  cvodea.h
  cvodea_impl.h
  cvodes.c
  cvodes.h
  cvodes.vcproj
  cvodes_impl.h
  cvodesio.c
  cvspgmr.c
  cvspgmr.h
  cvspgmr_impl.h
  dense.c
  dense.h
  iterative.c
  iterative.h
  nvector.c
  nvector.h
  nvector_serial.c
  nvector_serial.h
  smalldense.c
  smalldense.h
  spgmr.c
  spgmr.h
  sundials_config.h
  sundialsmath.c
  sundialsmath.h
  sundialstypes.h