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<?php
if(empty($SITEDEF_H)){require('SITEDEF.php');}
if(empty($PARAM_H)){require('getPARAM.php');}
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/TWO_COLUMN_HEADER/" . $SSI_QUERYSTRING);
?>
<div ID="mainWLS" align="left">
<H2 align="center">Tutorials</H2>
<font color="#007766"><h4>Gene Structure Annotation</h4></font>
<P>
<DL>
<DT><A NAME="UCA" HREF="./UCA_ATGDB.php"><B>U</B>ser <B>C</B>ontributed <B>A</B>nnotation (UCA):</A>
Third party annotation capabilities of AtGDB.
<DD>In this overview of the AtGDB annotation archival system, we introduce the available annotation content and procedures for
contributing your own gene annotation.
<DD><I>This <U>Overview</U> is suitable for <B>MODERATE</B> levels of experience</I>
<BR>
<BR>
<DT><A HREF="./HOWTO/GSannotation/index.php">HOW-TO:Gene Annotation (PART 1: Terminology)</A>
<DD>In this HOW-TO introduction we present key concepts and common terminology used in molecular genetics which pertain to Gene Annotation.
<DD><I>This <U>HOW-TO</U> is suitable for <B>ALL</B> levels of experience</I>
<BR>
<BR>
<DT><A HREF="./HOWTO/GSannotation/walkthrough.php">HOW-TO:Gene Annotation (Part 2: GeneSeqer)</A>
<DD>In this HOW-TO we step through a hands-on use of EST, cDNA, and protein sequences to assess gene structure.
<DD><I>This <U>HOW-TO</U> is suitable for <B>ALL</B> levels of experience</I>
<BR>
<BR>
<DT><A HREF="./lesson/">Gene Discovery & Annotation Through AtGDB:</A> An Integrated Teaching Module
<DD>This module is intended for small groups or entire classrooms of science students in middle or high school.
By working through the module, students will begin with understanding the structure of DNA and conclude with
making gene annotations that will assist real scientists in research labs.
<DD><I>This <U>Teaching Module</U> is suitable for <B>ALL</B> levels of experience</I>
</DL>
</P>
<BR>
<font color="#007766"><h4>Spliced Alignment 'via the web'</h4></font>
<P>
<DL>
<DT><A HREF="./GSQ_ATGDB.php">GeneSeqer@AtGDB:</A> A brief guided tour of the GeneSeqer@AtGDB web-service.
<DD>In this tutorial we introduce the use of EST, cDNA, and protein sequences to assess gene structure in the model plant <I>Arabidopsis thaliana</I>.
<DD><I>This <U>Overview</U> is suitable for <B>MODERATE</B> levels of experience</I>
</DL>
</P>
<DT><A HREF="http://www.plantgdb.org/tutorial/">GeneSeqer@PlantGDB:</A> A brief guided tour of the GeneSeqer@PlantGDB web-service.
<DD>In this tutorial we introduce the use of tentatively unique gene (TUG) contigs to predict gene structure for
a large genomic sequence of <I>Sorghum bicolor</I>.<BR>
<DD><I>This <U>Overview</U> is suitable for <B>MODERATE</B> levels of experience</I>
</DL>
</P>
</div>
<?php
require('SSI_GDBprep.php');
virtual("${CGIPATH}SSI_GDBgui.pl/STANDARD_FOOTER/" . $SSI_QUERYSTRING);
?>
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